CPSP Tools - HPdeg

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HPstruct
structure pred.

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PDB, CML, ...

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3D visualization

HPdeg
degeneracy

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neutral network

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seq. design

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HPdeg:

HPdeg calculates the degeneracy of a given HP-sequence, that is the number of optimal structures in the 3D-lattice HP-model the sequence can adopt. The calculation is based on the CPSP approach by Backofen and Will. Analogously to HPstruct, all optimal structures of a given sequence are calculated to determine the sequence's degeneracy.

For more information read here.

Parameters

HP-Sequence:
Lattice: CUB FCC
Do not break symmetries