CPSP Tools - HPstruct

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HPstruct
structure pred.

HPconvert
PDB, CML, ...

HPview
3D visualization

HPdeg
degeneracy

HPnnet
neutral network

HPdesign
seq. design

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PDB to lattice

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HPstruct:

HPstruct implements the CPSP approach, as introduced by Backofen and Will (Constraints, 2006), to predict provably optimal structures of 3D lattice proteins in the HP-model. For a given HP-sequence S and a given lattice type (cubic or face centered cubic), (all) optimal structures are calculated. The CPSP approach computes the global minimal energy for S, too.

For more information read here.

Parameters:

HP-Sequence:
Lattice: CUB FCC
Number of Structures:
Structure Model: Backbone Sidechain

Optional Parameters:

Do not break symmetries
Use Distance Measure