CPSP Tools
Constraint-based Protein Structure Prediction

The CPSP-tools package provides programs to solve exactly and completely the problems typical of studies using 3D lattice protein models. Among the tasks addressed are the prediction of globally optimal and/or suboptimal structures as well as sequence design and neutral network exploration.

Choose a tool from the left for ad hoc usage
( CPSP-tools version 2.4.2 ) ( LatPack version 1.7.2 )

Download the full CPSP-tools or LatPack package for local usage!

If you use the CPSP-tools please cite the following publications:

• Martin Mann, Sebastian Will, and Rolf Backofen.
  CPSP-tools - Exact and Complete Algorithms for High-throughput 3D Lattice Protein Studies.
  In BMC Bioinformatics, 9, 230, 2008.
• Martin Mann, Cameron Smith, Mohamad Rabbath, Marlien Edwards, Sebastian Will, and Rolf Backofen.
  CPSP-web-tools: a server for 3D lattice protein studies.
  Bioinformatics, 25 (5), 676-677, 2009.

• Martin Mann, Daniel Maticzka, Rhodri Saunders, and Rolf Backofen.
  Classifying protein-like sequences in arbitrary lattice protein models using LatPack.
  In HFSP Journal, 2(6), 396, 2008.